Create a boxplot/jitter plot to show molecule counts distribution.

# S4 method for STCompR
cmp_boxplot(
  object,
  normalized = TRUE,
  transform = c("None", "log2", "log10", "log"),
  colors = NULL,
  ...
)

Arguments

object: A STCompR object.
normalized: A logical value indicating whether to use normalized counts.
transform: A character string specifying the transformation to be applied to molecule counts. Options include "None", "log2", "log10", and "log".
colors: A vector of colors for the boxplot/jitter plot.
...: Additional arguments to be passed to the underlying ggpol::geom_boxjitter function.

Value

A ggplot object displaying the molecule counts distribution.

Examples

example_dataset("11284296/files/cmp_xen")
#> |-- INFO :  Dataset 11284296/files/cmp_xen was already loaded. 
cmp_xen
#> |-- INFO :  An object of class STCompR 
#> |-- INFO :  xen_r1 Condition_1 
#> |-- INFO :  xen_r2 Condition_2 
#> |-- INFO :  Number of features:  7 
#> |-- INFO :  >>> Please, use show_st_methods(class = 'STCompR') to show availables methods <<< 
cmp_boxplot(cmp_xen, normalized = TRUE, transform = "log2", colors = c("blue", "red"))