STarlight is still in beta version.

STarlight

STarlight leverages a grid-based strategy via a uniform binning of x/y axis for exploratory analysis of cell or molecule coordinates.

Installation

R

The STarlight library is currently not available in CRAN or Bioconductor. To install it from github, use:

devtools::install_github("dputhier/STarlight")
library(STarlight)

Terminal

Download the tar.gz from github or clone the main branch. Uncompress and run the following command within STarlight folder:

R CMD INSTALL .

Then load the library within R.

library(STarlight)

Documentation

Documentation is available at https://dputhier.github.io/STarlight/.

A guided tutorial can be found here https://dputhier.github.io/STarlight/articles/usage.html

Case study material

Scripts used to produce the Merscope hepatocarcinoma case study figures are available at https://github.com/dputhier/STarlight_article. Merscope data used is from Magen et al..