Extract genes list from each gene clusters.

Source: R/get_genes.R

Extract genes list from each gene clusters. Can extract genes from all clusters (default) or from specified clusters.

get_genes(object, cluster = "all", top = FALSE)

Arguments

object

A ClusterSet object.

cluster

A vector of gene cluster identity (all by default).

top

A logical to indicate whether to provide top genes.

Value

A character vector.

Examples

load_example_dataset('7871581/files/pbmc3k_medium_clusters')
#> |-- INFO :  Dataset 7871581/files/pbmc3k_medium_clusters was already loaded. 
# Get all selected genes
x <- get_genes(pbmc3k_medium_clusters)

# Get genes from gene cluster 1
x<- get_genes(pbmc3k_medium_clusters, cluster = 1)

# Get top 5 genes from cluster 1
pbmc3k_medium_clusters <- top_genes(pbmc3k_medium_clusters, top = 5)
#> |-- INFO :  Results are stored in top_genes slot of ClusterSet object. 
x <- get_genes(pbmc3k_medium_clusters, cluster = 1, top = TRUE)