Enrichment analysis using GO database of gene clusters from a ClusterSet object

Source: R/enrichment_analysis.R

This function performs enrichment analysis of all gene clusters from a ClusterSet object and store the results in the cluster_annotations slot.

enrich_go(object, species = "Hsapiens", ontology = "all")

Arguments

object

an object of class ClusterSet.

species

a character string indicating the species name, as a concatenation of the first letter of the name (uppercase) and the family name (lowercase), e.g human -> Hsapiens, mouse -> Mmusculus

ontology

a character string indicating the ontology to use for the enrichment analysis. One of "BP", "MF", and "CC" ontology, or "ALL".

Value

A ClusterSet object