Plot x/y coordinates of molecules — spatial_plot,STGrid-method • STarlight

Plot x/y coordinates of molecules of a spatial transcriptomics experiment.

# S4 method for STGrid
spatial_plot(
  object = NULL,
  feat_list = NULL,
  colors = NULL,
  size = 0.1,
  coord_fixed = TRUE
)

Arguments

object: The STGrid object.
feat_list: The name of the features for which the spatial image will be created.
colors: The colors to use for features in the spatial image.
size: The size of the points
coord_fixed: Logical value indicating whether to keep the aspect ratio fixed. Defaults to TRUE.

example_dataset()
xen <- Xenium_Mouse_Brain_Coronal_7g
spatial_plot(xen,
             feat_list=c("Chat", "Nwd2", "Ano1"),
             size=0.05)