Compare distribution of features across various STGrid objects.

This function compares distributions of features across various STGrid objects using different plot types, including histograms, density plots, boxplots, or boxjitter plots.

dist_st(
  ...,
  normalized = FALSE,
  names = NULL,
  type = c("boxjitter", "hist", "density", "boxplot"),
  transform = c("None", "log2", "log10", "log"),
  border_color = "#333333",
  fill_color = NULL,
  ncol = 2
)

Arguments

...

One or more objects of class "STGrid" to be compared.

normalized

Logical, indicating whether counts should be normalized. Defaults to FALSE.

names

A character vector specifying the names for each object. Defaults to NULL, where default names are assigned.

type

The type of plot to be generated. Can be one of "hist" (histogram), "density" (density plot), "boxplot", or "boxjitter". Defaults to "hist".

transform

The transformation to be applied to the counts. Can be one of "None", "log2", "log10", or "log". Defaults to "None".

border_color

The color of the border for plot elements. Defaults to "#333333".

fill_color

A character vector specifying the fill colors for the plot. If NULL, default palette is used. Defaults to NULL.

ncol

Number of columns for facet wrap. Defaults to 2.

Examples

example_dataset()
#> |-- INFO :  Dataset 11284233/files/Xenium_Mouse_Brain_Coronal_7g was already loaded. 
xen <- Xenium_Mouse_Brain_Coronal_7g
x_bins <-  bin_x(xen)[180:nbin_x(xen)]
y_bins <-  bin_y(xen)[100:nbin_y(xen)]
xen_r1 <- xen[x_bins, y_bins]
x_bins <-  bin_x(xen)[60:100]
y_bins <-  bin_y(xen)[100:nbin_y(xen)]
xen_r2 <- xen[x_bins, y_bins]
x_bins <-  bin_x(xen)[20:60]
y_bins <-  bin_y(xen)[20:60]
xen_r3 <- xen[x_bins, y_bins]
dist_st(xen_r1, xen_r2, xen_r3,
        fill_color=c("red", "black", "green"),
        type="density",
        transform="log10")

dist_st(xen_r1, xen_r2, xen_r3,
        fill_color=c("red", "black", "green"),
        type="boxjitter",
        transform="log2")