Dataset for the training
Theodorou V, Stark R, Menon S, Carroll JS GATA3 acts upstream of FOXA1 in mediating ESR1 binding by shaping enhancer accessibility. Genome Research, 23(1):12-22. 2013 [Pubmed] [Article]GEO Series GSE40129
| ExpName | CellLine | Replicate | SampleID | SRAExpID | Selected |
|---|---|---|---|---|---|
| siNT_ER_E2_r1 | MCF-7 | r1 | GSM986059 | SRX176856 | X |
| siGATA_ER_E2_r1 | MCF-7 | r1 | GSM986060 | SRX176857 | X |
| siNT_ER_E2_r2 | MCF-7 | r2 | GSM986061 | SRX176858 | X |
| siGATA_ER_E2_r2 | MCF-7 | r2 | GSM986062 | SRX176859 | X |
| siNT_ER_E2_r3 | MCF-7 | r3 | GSM986063 | SRX176860 | X |
| siGATA_ER_E2_r3 | MCF-7 | r3 | GSM986064 | SRX176861 | X |
| siNT_FOXA1_Veh_r1 | MCF-7 | r1 | GSM986065 | SRX176862 | |
| siGATA_FOXA1_Veh_r1 | MCF-7 | r1 | GSM986066 | SRX176863 | |
| GATA3_E2_r1 | MCF-7 | r1 | GSM986067 | SRX176864 | |
| GATA3_Veh_r1 | MCF-7 | r1 | GSM986068 | SRX176865 | |
| GATA3_E2_r2 | MCF-7 | r2 | GSM986069 | SRX176866 | |
| GATA3_Veh_r2 | MCF-7 | r2 | GSM986070 | SRX176867 | |
| GATA3_E2_r3 | MCF-7 | r3 | GSM986071 | SRX176868 | |
| GATA3_Veh_r3 | MCF-7 | r3 | GSM986072 | SRX176869 | |
| GATA3_E2_r4 | MCF-7 | r4 | GSM986073 | SRX176870 | |
| GATA3_Veh_r4 | MCF-7 | r4 | GSM986074 | SRX176871 | |
| GATA3_E2_r5 | MCF-7 | r5 | GSM986075 | SRX176872 | |
| GATA3_Veh_r5 | MCF-7 | r5 | GSM986076 | SRX176873 | |
| siNT_H3K27ac_E2_r1 | MCF-7 | r1 | GSM986077 | SRX176874 | |
| siGATA_H3K27ac_E2_r1 | MCF-7 | r1 | GSM986078 | SRX176875 | |
| siNT_H3K27ac_Veh_r1 | MCF-7 | r1 | GSM986079 | SRX176876 | |
| siGATA_H3K27ac_Veh_r1 | MCF-7 | r1 | GSM986080 | SRX176877 | |
| siNT_H3K4me1_E2_r1 | MCF-7 | r1 | GSM986081 | SRX176878 | X |
| siGATA_H3K4me1_E2_r1 | MCF-7 | r1 | GSM986082 | SRX176879 | X |
| siNT_H3K4me1_Veh_r1 | MCF-7 | r1 | GSM986083 | SRX176880 | |
| siGATA_H3K4me1_Veh_r1 | MCF-7 | r1 | GSM986084 | SRX176881 | |
| siNT_p300_E2_r2 | MCF-7 | r2 | GSM986085 | SRX176882 | |
| siGATA_p300_E2_r2 | MCF-7 | r2 | GSM986086 | SRX176883 | |
| siNT_p300_Veh_r2 | MCF-7 | r2 | GSM986087 | SRX176884 | |
| siGATA_p300_Veh_r2 | MCF-7 | r2 | GSM986088 | SRX176885 | |
| ZR751_siNT_ER_E2_r1 | ZR751 | r1 | GSM986089 | SRX176886 | |
| ZR751_siGATA_ER_E2_r1 | ZR751 | r1 | GSM986090 | SRX176887 | |
| MCF-7_input_r3 | MCF-7 | r3 | GSM986091 | SRX176888 | X |
| ZR751_input_r1 | ZR751 | r1 | GSM986092 | SRX176889 | |
| ZR751_input_r1 | ZR751 | r1 | GSM986092 | SRX176889 |
